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<html><head><title>Python: module genome_exception</title>
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<font color="#ffffff" face="helvetica, arial">&nbsp;<br><big><big><strong>genome_exception</strong></big></big></font></td
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><font color="#ffffff" face="helvetica, arial"><a href=".">index</a><br><a href="file:/home/lc6/pygenome/src/genome_exception.py">/home/lc6/pygenome/src/genome_exception.py</a></font></td></tr></table>
    <p><tt><a href="exceptions.html#Exception">Exception</a>&nbsp;tree</tt></p>
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<font color="#ffffff" face="helvetica, arial"><big><strong>Classes</strong></big></font></td></tr>
    
<tr><td bgcolor="#ee77aa"><tt>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</tt></td><td>&nbsp;</td>
<td width="100%"><dl>
<dt><font face="helvetica, arial"><a href="exceptions.html#Exception">exceptions.Exception</a>
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<dt><font face="helvetica, arial"><a href="genome_exception.html#GException">GException</a>
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<dl>
<dt><font face="helvetica, arial"><a href="genome_exception.html#GCogNotFindException">GCogNotFindException</a>
</font></dt><dt><font face="helvetica, arial"><a href="genome_exception.html#GReadFileException">GReadFileException</a>
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</dd>
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<font color="#000000" face="helvetica, arial"><a name="GCogNotFindException">class <strong>GCogNotFindException</strong></a>(<a href="genome_exception.html#GException">GException</a>)</font></td></tr>
    
<tr bgcolor="#ffc8d8"><td rowspan=2><tt>&nbsp;&nbsp;&nbsp;</tt></td>
<td colspan=2><tt>COG&nbsp;name&nbsp;is&nbsp;not&nbsp;in&nbsp;the&nbsp;cog&nbsp;map<br>&nbsp;</tt></td></tr>
<tr><td>&nbsp;</td>
<td width="100%"><dl><dt>Method resolution order:</dt>
<dd><a href="genome_exception.html#GCogNotFindException">GCogNotFindException</a></dd>
<dd><a href="genome_exception.html#GException">GException</a></dd>
<dd><a href="exceptions.html#Exception">exceptions.Exception</a></dd>
</dl>
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Methods defined here:<br>
<dl><dt><a name="GCogNotFindException-__init__"><strong>__init__</strong></a>(self, cog_name)</dt><dd><tt>Arguments:<br>
-&nbsp;`cog_name`:&nbsp;the&nbsp;cog&nbsp;name&nbsp;is&nbsp;not&nbsp;in&nbsp;cog&nbsp;map</tt></dd></dl>

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Properties inherited from <a href="genome_exception.html#GException">GException</a>:<br>
<dl><dt><strong>msg</strong></dt>
<dd><dl><dt><a name="-<em>get</em>"><strong><em>get</em></strong></a> = _get_msg(self)</dt></dl>
</dd>
<dd><dl><dt><a name="-<em>set</em>"><strong><em>set</em></strong></a> = _set_msg(self, value)</dt></dl>
</dd>
</dl>
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Methods inherited from <a href="exceptions.html#Exception">exceptions.Exception</a>:<br>
<dl><dt><a name="GCogNotFindException-__getitem__"><strong>__getitem__</strong></a>(...)</dt></dl>

<dl><dt><a name="GCogNotFindException-__str__"><strong>__str__</strong></a>(...)</dt></dl>

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<font color="#000000" face="helvetica, arial"><a name="GException">class <strong>GException</strong></a>(<a href="exceptions.html#Exception">exceptions.Exception</a>)</font></td></tr>
    
<tr bgcolor="#ffc8d8"><td rowspan=2><tt>&nbsp;&nbsp;&nbsp;</tt></td>
<td colspan=2><tt>Base&nbsp;<a href="exceptions.html#Exception">Exception</a><br>&nbsp;</tt></td></tr>
<tr><td>&nbsp;</td>
<td width="100%">Methods defined here:<br>
<dl><dt><a name="GException-__init__"><strong>__init__</strong></a>(self, msg<font color="#909090">=''</font>)</dt><dd><tt>Base&nbsp;constructor</tt></dd></dl>

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Properties defined here:<br>
<dl><dt><strong>msg</strong></dt>
<dd><dl><dt><a name="-<em>get</em>"><strong><em>get</em></strong></a> = _get_msg(self)</dt></dl>
</dd>
<dd><dl><dt><a name="-<em>set</em>"><strong><em>set</em></strong></a> = _set_msg(self, value)</dt></dl>
</dd>
</dl>
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Methods inherited from <a href="exceptions.html#Exception">exceptions.Exception</a>:<br>
<dl><dt><a name="GException-__getitem__"><strong>__getitem__</strong></a>(...)</dt></dl>

<dl><dt><a name="GException-__str__"><strong>__str__</strong></a>(...)</dt></dl>

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<font color="#000000" face="helvetica, arial"><a name="GReadFileException">class <strong>GReadFileException</strong></a>(<a href="genome_exception.html#GException">GException</a>)</font></td></tr>
    
<tr bgcolor="#ffc8d8"><td rowspan=2><tt>&nbsp;&nbsp;&nbsp;</tt></td>
<td colspan=2><tt>Read&nbsp;File&nbsp;<a href="exceptions.html#Exception">Exception</a><br>&nbsp;</tt></td></tr>
<tr><td>&nbsp;</td>
<td width="100%"><dl><dt>Method resolution order:</dt>
<dd><a href="genome_exception.html#GReadFileException">GReadFileException</a></dd>
<dd><a href="genome_exception.html#GException">GException</a></dd>
<dd><a href="exceptions.html#Exception">exceptions.Exception</a></dd>
</dl>
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Methods defined here:<br>
<dl><dt><a name="GReadFileException-__init__"><strong>__init__</strong></a>(self, file_name, line_num, msg)</dt><dd><tt>Constructor<br>
&nbsp;<br>
Arguments:<br>
-&nbsp;`file_name`:&nbsp;name&nbsp;of&nbsp;the&nbsp;file<br>
-&nbsp;`line_num`:&nbsp;line&nbsp;number<br>
-&nbsp;`msg`:&nbsp;error&nbsp;message</tt></dd></dl>

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Properties inherited from <a href="genome_exception.html#GException">GException</a>:<br>
<dl><dt><strong>msg</strong></dt>
<dd><dl><dt><a name="-<em>get</em>"><strong><em>get</em></strong></a> = _get_msg(self)</dt></dl>
</dd>
<dd><dl><dt><a name="-<em>set</em>"><strong><em>set</em></strong></a> = _set_msg(self, value)</dt></dl>
</dd>
</dl>
<hr>
Methods inherited from <a href="exceptions.html#Exception">exceptions.Exception</a>:<br>
<dl><dt><a name="GReadFileException-__getitem__"><strong>__getitem__</strong></a>(...)</dt></dl>

<dl><dt><a name="GReadFileException-__str__"><strong>__str__</strong></a>(...)</dt></dl>

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<font color="#ffffff" face="helvetica, arial"><big><strong>Data</strong></big></font></td></tr>
    
<tr><td bgcolor="#55aa55"><tt>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</tt></td><td>&nbsp;</td>
<td width="100%"><strong>__author__</strong> = 'Lei Chen &lt;hide1713@gmail.com&gt;'</td></tr></table><p>
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<font color="#ffffff" face="helvetica, arial"><big><strong>Author</strong></big></font></td></tr>
    
<tr><td bgcolor="#7799ee"><tt>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</tt></td><td>&nbsp;</td>
<td width="100%">Lei&nbsp;Chen&nbsp;&lt;hide1713@gmail.com&gt;</td></tr></table>
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